Single-atom magnets store bits of data

NEW ORLEANS — ­The tiniest electronic gadgets have nothing on a new data-storage device. Each bit is encoded using the magnetic field of a single atom — making for extremely compact data storage, although researchers have stored only two bits of data so far.

“If you can make your bit smaller, you can store more information,” physicist Fabian Natterer of the École Polytechnique Fédérale de Lausanne in Switzerland said March 16 at a meeting of the American Physical Society. Natterer and colleagues also reported the result in the March 9 Nature.
Natterer and colleagues created the minuscule magnetic bits using atoms of holmium deposited on a surface of magnesium oxide. The direction of each atom’s magnetic field served as the 1 or 0 of a bit, depending on whether its north pole was pointing up or down.

Using a scanning tunneling microscope, the scientists could flip an atom’s magnetic orientation to switch a bit from 0 to 1. To read out the data, the researchers measured the current running through the atom, which depends on the magnetic field’s orientation. To ensure that the change in current observed after flipping a bit was due to a reorientation of the atom’s magnetic field, the team added bystander iron atoms to the mix and measured how the holmium atoms’ magnetic fields affected the iron atoms.

The work could lead to new hard drives that store data at much greater densities than currently possible. Today’s technologies require 10,000 atoms or more to store a single bit of information.

Natterer also hopes to use these mini magnets to construct materials with fine-tuned magnetic properties, building substances a single atom at a time. “You can play with them. It’s like Lego,” he says.

For glass frogs, moms matter after all

Glass frogs often start life with some tender care from a source scientists didn’t expect: frog moms.

Maternal care wouldn’t be news among mammals or birds, but amphibian parenting intrigues biologists because dads are about as likely as moms to evolve as the caregiver sex. And among New World glass frogs (Centrolenidae), what little parental care there is almost always is dad’s job — or so scientists thought, says Jesse Delia of Boston University.
Months of strenuous nights searching streamside leaves in five countries, however, have revealed a widespread world of brief, but important, female care in glass frogs. In examining 40 species, Delia and Laura Bravo-Valencia, now at Corantioquia, a government environmental agency in Santa Fe de Antioquia, Colombia, found that often mothers lingered over newly laid eggs for several hours. By pressing maternal bellies against the brood, moms hydrated the jelly-glop of eggs and improved offspring chances of survival, Delia, Bravo-Valencia and Karen Warkentin, also of BU, report online March 31 in the Journal of Evolutionary Biology.

Glass frogs take their name from see-through skin on their bellies and, in certain cases, transparent organ tissues. (Some have clear hearts that reveal blood swishing through.) These frogs aren’t exactly obscure species, but until this field project, which stretched over six rainy seasons, female care in the family was unknown.

Female glass frogs may not cuddle their eggs for long, but it’s enough to matter, the researchers found. As is common in frogs, the mothers don’t drink with their mouths but absorb water directly through belly skin into a bladder. Moms pressing against a mass of newly laid eggs caused the protective goo to swell — perhaps by osmosis or peeing — and the mass to quadruple in size. For some of the glass frogs in the study, the youngsters were on their own once mom left. But at least hydration created an unpleasant amount of slime for a predator to bite through before getting to frog embryos.
Night-hunting katydids in captivity, when offered a choice, barely nibbled at a hydrated mass of frog offspring, concentrating instead on eating an unhydrated clutch. In the field, when researchers removed about two dozen moms from their clutches in two species, mortality at least doubled to around 80 percent. Predators and dehydration caused the most deaths.

There are still more than 100 glass frog species that Delia and Bravo-Valencia haven’t yet watched in the wild. But the researchers did track down maternal care in 10 of 12 genera. Such a widespread form of maternal care probably evolved in the ancestor of all glass frogs, the researchers propose after analyzing glass frog family trees several ways.

In contrast, prolonged care from glass frog dads — rehydrating the egg mass as needed and fighting off predators such as hungry spiders — seems to have arisen independently later, at least twice. Across evolution in the animal kingdom, “usually we don’t see transitions from female to male care,” Delia says. “The pattern we found is completely bizarre.”

Why females started hanging around their eggs at all fascinates Hope Klug, an evolutionary biologist at the University of Tennessee at Chattanooga who studies parental care. In frogs, with eggs mostly fertilized externally, females could easily leave any care to dad.

“Parental care is perhaps more common and diverse in animals than we realize,” she says. “We just might have to look a little bit harder for it.”

Petunias spread their scent using pushy proteins

When it comes to smelling pretty, petunias are pretty pushy.

Instead of just letting scent compounds waft into the air, the plants use a particular molecule called a transporter protein to help move the compounds along, a new study found. The results, published June 30 in Science, could help researchers genetically engineer many kinds of plants both to attract pollinators and to repel pests and plant eaters.

“These researchers have been pursuing this transporter protein for a while,” says David Clark, an expert in horticultural biotechnology and genetics at the University of Florida in Gainesville. “Now they’ve got it. And the implications could be big.”
Plants use scents to communicate (SN: 7/27/02, p. 56). The scent compounds can attract insects and other organisms that spread pollen and help plants reproduce, or can repel pests and plant-eating animals. The proteins found in the new study could be used to dial the amount of scent up or down so that plants can attract more pollinators or better protect themselves. Currently unscented plants could be engineered to smell, too, giving them a better shot at reproduction and survival, Clark says.
Plants get their scents from volatile organic compounds, which easily turn into gases at ambient temperatures. Petunias get their sweet smell from a mix of benzaldehyde, the same compound that gives cherries and almonds their fruity, nutty scent, and phenylpropanoids, often used in perfumes.

But nice smells have a trade-off: If these volatile compounds build up inside a plant, they can damage the plant’s cells.
About two years ago, study coauthor Joshua Widhalm, a horticulturist at Purdue University in West Lafayette, Ind., and colleagues used computer simulations to look at the way petunias’ scent compounds moved. The results showed that the compounds can’t move out of cells fast enough on their own to avoid damaging the plant. So the researchers hypothesized that something must be shuttling the compounds out.

In the new study, led by Purdue biochemist Natalia Dudareva, the team looked for genetic changes as the plant developed from its budding stage, which had the lowest levels of volatile organic compounds, to its flower-opening stage, with the highest levels. As flowers opened and scent levels peaked, the gene PhABCG1 went into overdrive; levels of the protein that it makes jumped to more than 100 times higher than during the budding stage, the researchers report.

The team then genetically engineered petunias to produce 70 to 80 percent less of the PhABCG1 protein. Compared with regular petunias, the engineered ones released around half as much of the scent compounds, with levels inside the plant’s cells building to double or more the normal levels. Images of the cells show that the accumulation led to deterioration of cell membranes.

A lot of work has been done to identify the genes and proteins that generate scent compounds, says Clark. But this appears to be the first study to have identified a transporter protein to shuttle those compounds out of the cell. “That’s a big deal,” he says.

Half of the Milky Way comes from other galaxies

Galaxies may grow by swiping gas from their neighbors.

New simulations suggest that nearly half the matter in the Milky Way may have been siphoned from the gas of other galaxies. That gas provides the raw material that galaxies use to build their bulk. The finding, scheduled to appear in the Monthly Notices of the Royal Astronomical Society, reveals a new, unexpected way for galaxies to acquire matter and could give clues to how they evolve.
“These simulations show a huge amount of interaction among galaxies, a huge dance that’s going on,” says astronomer Romeel Davé of the University of Edinburgh. That dance, and the subsequent exchange of atoms, could be what establishes a galaxy’s character — whether it’s small or big, elliptical or spiral, quiet or bursting with star formation. If the simulation results are confirmed with observations, it could be a major advancement in understanding galaxy formation, Davé says.

It makes sense that much of the material in one galaxy actually came from other galaxies, says study coauthor Claude-André Faucher-Giguère, a theoretical astrophysicist at Northwestern University in Evanston, Ill. “Still, the result was really unexpected,” he says.

Astronomers thought galaxies got their matter in two main ways. First, atoms clumped together to form stars and then galaxies, not long after the Big Bang about 13.8 billion years ago. Then some of those atoms were eventually ejected by supernovas but rained back onto the same galaxy, recycling the gas again and again.

The new simulations showed a third way galaxies could score gas. Powerful supernova explosions would eject atoms, in the form of gas, far from their home galaxies into intergalactic space. Those atoms would then travel through space, pushed toward other galaxies by galactic winds that move at several hundred kilometers per second. When the particles neared a galaxy’s gravitational pull, they would get sucked in, where they would serve as the basis for stars, planets, dust and other material in their new galactic home. Still, this exchange of atoms is extremely difficult to spot in space because the gas atoms, don’t give off light like stars do.
Faucher-Giguère and colleagues spotted the exchange in computer simulations that show how galaxies formed just after the Big Bang and how they have evolved over time. The team tracked gas atoms as they moved through the model universe, formed stars and then were ejected from galaxies as those stars exploded.

In the simulations, up to half of the atoms in large galaxies were pulled in from other galaxies. Because more massive galaxies have more gravity, they tended to pull atoms from the ejected material of small galaxies. The exchange appears to take billions of years as atoms travel the vast space between galaxies, the team notes.

“It’s that not surprising to see a galaxy kick out matter, which is then pulled in by other galaxies,” Davé says. What is surprising, he says, is the amount of material that’s transferred. Before seeing the simulations, he would have guessed that about 5 percent of gas was transferred among galaxies this way. “To see that it is up to 50 percent is pretty remarkable,” he says.

Already, astronomers are searching for evidence of this material-swapping behavior among galaxies. Faucher-Giguère and colleagues, working with researchers using the Hubble Space Telescope, hope to observe intergalactic transfer of gas among galaxies soon.

This giant marsupial was a seasonal migrant

The largest marsupial to ever walk the Earth just got another accolade: It’s also the only marsupial known to migrate seasonally.

Diprotodon optatum was a massive wombat-like herbivore that lived in what’s now Australia and New Guinea during the Pleistocene, until about 40,000 years ago. Now, an analysis of one animal’s teeth suggests that it undertook long, seasonal migrations like those made by zebras and wildebeests in Africa.

Animals pick up the chemical element strontium through their diet, and it leaves a record in their teeth. The ratio of different strontium isotopes varies from place to place, so it can provide clues about where an animal lived. Strontium isotope ratios in an incisor from one D. optatum revealed a repeating pattern. That suggests the animal migrated seasonally — it moved around, but generally hit up the same rest stops each year, researchers report September 27 in the Proceedings of the Royal Society B.

It’s the first evidence to show a marsupial — living or extinct — migrating in this way, says study coauthor Gilbert Price, a paleoecologist at the University of Queensland in Brisbane, Australia. It’s not clear exactly why this mega-marsupial might have migrated, but an analysis of the carbon isotopes in its teeth suggests it ate a fairly limited diet. So it might have migrated to follow food sources that popped up seasonally in different places, the authors suggest.

This ancient creature looks like a spider with a tail

What looks like a spider, but with a segmented rear plus a long spike of a tail, has turned up in amber that’s about 100 million years old.

Roughly the size of a peppercorn (not including the tail, which stretches several times the body length), this newly described extinct species lived in forests in what is now Myanmar during the dinosaur-rich Cretaceous Period.

Spiders as their own distinctive group had evolved long before. Whether this tailed creature should be considered a true spider (of the group Araneae) is debatable though, researchers acknowledge February 5 in two studies in Nature Ecology & Evolution. In one of the papers, the fossils’ chimeric mash-up of traits both spidery and nonspidery inspired Bo Wang of the Chinese Academy of Sciences in Nanjing and colleagues to name the species Chimerarachne yingi.
C. yingi indeed has some anatomy that, among living animals, would be unique to spiders, says Gonzalo Giribet of Harvard University, a coauthor of the other paper. The fossils have what look like little structures that could have exuded spider silk, as well as distinctive male spider sex organs. Called pedipalps, these modified legs have no direct connection to a sperm-producing organ. Spiders need to load them before mating, for instance by ejaculating a sperm droplet and dipping pedipalps in it, so the structures can deliver the sperm a bit like a syringe.

But the abdomen-like end of a true spider’s body isn’t segmented and certainly doesn’t have a tail. Giribet and his colleagues’ analysis puts C. yingi in an ancient sister group of spiders. That’s startling in itself, Giribet says, because researchers have speculated that this Uraraneida group had gone extinct much earlier. So, spider or not, C. yingi remains intriguing.

14 cattle eyeworms removed from Oregon woman’s eye

A 26-year-old woman felt something in her left eye. For days, she couldn’t shake the sensation. But this was no errant eyelash or dive-bombing gnat.

A week after that first irritation, the Oregon resident pulled a translucent worm, about a centimeter long, from her eye. With that harrowing feat, she became the first ever reported case of a human infestation with the cattle eyeworm, Thelazia gulosa. “This is a very rare event and exciting from a parasitological perspective,” says medical parasitologist Richard Bradbury of the U.S. Centers for Disease Control and Prevention in Atlanta. “Perhaps not so exciting if you are the patient.”
Over 20 days, she and her doctors removed 14 worms from her infected eye, researchers report online February 12 in the American Journal of Tropical Medicine and Hygiene. After that, no more irritation.

T. gulosa is a nematode found in North America, Europe, Australia and central Asia. It infects the large, watchful eyes of cattle. The worm spends its larval stage in the abdomen of the aptly named face fly, Musca autumnalis. As the fly feasts on tears and eye secretions, it spreads the nematode larva, which then grow into adult worms.

Two other Thelazia species are known to infect humans, but rarely. There have been more than 160 cases reported for one species in Europe and Asia, and only 10 cases in North America, by a species found in dogs. This new perpetrator was not expected to be seen in a human, Bradbury says.

The young woman had been horseback riding near cattle farms in Gold Beach, Oregon, which may explain her face-to-face with the fly.
“It is just unfortunate for the patient,” Bradbury says, “that she was not able to swish away that one infected fly quickly enough from her eye.”

Babies can recover language skills after a left-side stroke

AUSTIN, Texas — Babies’ stroke-damaged brains can pull a mirror trick to recover.

A stroke on the left side of the brain often damages important language-processing areas. But people who have this stroke just before or after birth recover their language abilities in the mirror image spot on the right side, a study of teens and young adults shows. Those patients all had normal language skills, even though as much as half of their brain had withered away, researchers reported February 17 at the annual meeting of the American Association for the Advancement of Science.
Researchers so far have recruited 12 people ages 12 to 25 who had each experienced a stroke to the same region of their brain’s left hemisphere just before or after birth. People who have this type of stroke as adults often lose their ability to use and understand language, said study coauthor Elissa Newport, a neurology researcher at Georgetown University Medical Center in Washington, D.C.

MRI scans of healthy siblings of the stroke patients showed activity in language centers in the left hemisphere of the brain when the participants heard speech. The stroke patients showed activity in the exact same areas — just on the opposite side of the brain.

It’s well established that if an area of the brain gets damaged, other brain areas will sometimes compensate. But the new finding suggests that while young brains have an extraordinary capacity to recover, there might be limits on which areas can pinch-hit.

“When you look at a very well-defined population, recovery takes place in a very particular set of regions,” said Newport. Young children usually show language activity in the same areas on both sides of their brain, Newport noted, and the left side becomes more dominant over time. But in the case of a major stroke to the left side, the corresponding areas on the right side of the brain might already be primed to take over.

These giant viruses have more protein-making gear than any known virus

Two newly discovered giant viruses have the most comprehensive toolkit for assembling proteins found in any known virus. In a host cell, the viruses have the enzymes needed to wrangle all 20 standard amino acids, the building blocks of life.

Researchers dubbed the viruses Tupanvirus deep ocean and Tupanvirus soda lake, combining the name of the indigenous South American god of thunder, Tupan, with the extreme environment where each type of virus was found. The giant viruses are among the largest of their kind — up to 2.3 micrometers in length — which is about 23 times as long as a particle of HIV, the scientists report February 27 in Nature Communications.
Tupanviruses can infect a wide range of hosts, such as protists and amoebas, but pose no threat to humans, the researchers say.

Viruses are considered nonliving, but the genetic complexity of giant viruses has some scientists questioning that categorization. Each Tupanvirus, for example, has a massive genetic instruction book with roughly 1.5 million base pairs of DNA, more than what some bacteria have, says coauthor Bernard La Scola, a virologist at Aix-Marseille University in France.

But other scientists say giant viruses aren’t so different from their smaller kin. Research by Frederik Schulz, with the Department of Energy Joint Genome Institute in Walnut Creek, Calif., suggests these microscopic behemoths are regular viruses that acquired extra genes from hosts and should not be classified as life.

Tupanviruses don’t settle the controversy, but they do challenge our preconceptions of what life is, La Scola says.

Pollution regulations help Chesapeake Bay seagrass rebound

Underwater grasses are growing back in the Chesapeake Bay. The plants now carpet three times as much real estate as in 1984, thanks to more than 30 years of efforts to reduce nitrogen pollution. This environmental success story shows that regulations put in place to protect the bay’s health have made a difference, researchers report the week of March 5 in Proceedings of the National Academy of Sciences.

Rules limiting nutrient runoff from farms and wastewater treatment plants helped to decrease nitrogen concentrations in the bay by 23 percent since 1984. That decline in nitrogen has allowed the recovery of 17,000 hectares of grasses, the new study shows — enough to cover roughly 32,000 football fields.
“This is one of the best examples we have of linking long-term research data with management to show how important that is in restoring this critical habitat,” says Karen McGlathery, an environmental scientist at the University of Virginia in Charlottesville who wasn’t involved in the research. ”I don’t know of any other system that’s so large and so complicated where these connections have been made.”

The bay’s aquatic vegetation, including seagrasses and freshwater grasses, is an important part of coastal ecosystems, says study coauthor Jonathan Lefcheck, a marine ecologist at the Bigelow Laboratory for Ocean Sciences in East Boothbay, Maine. Beds of underwater grasses act as nurseries that shelter young fish and aquatic invertebrates. The plants clean the water by trapping particulates, and stabilize shorelines by preventing erosion. But the once-lush grasses began dying off in the 1950s when the region’s human population boomed, and cities and farms dumped increasing amounts of nitrogen and other nutrients into the bay.

In the late 1970s and early 1980s, state and federal agencies took action, limiting the amount of nutrients that could enter the bay from farms, water treatment facilities and other sources. Those groups also instituted programs to monitor the bay’s health, building up the stockpile of information that Lefcheck and his colleagues have now analyzed.

The researchers looked at aerial surveys of the bay, data on water temperature and nutrient levels, as well as land and fertilizer use. Using mathematical equations to test which variables had the biggest impact on seagrass regrowth, the team pinned down nitrogen reduction as the driving force. That makes sense: Too much nitrogen in water promotes the growth of plankton, which can block sunlight, and algae, which can settle on the grass blades and smother them.
Now, though, researchers are seeing just the opposite. Grasses need clean water to get a foothold, but once they settle in, they “modify their own environment and make it better,” Lefcheck says. “Once you get a little bit established, it can take off.”