A very specific kind of brain cell dies off in people with Parkinson’s

Deep in the human brain, a very specific kind of cell dies during Parkinson’s disease.

For the first time, researchers have sorted large numbers of human brain cells in the substantia nigra into 10 distinct types. Just one is especially vulnerable in Parkinson’s disease, the team reports May 5 in Nature Neuroscience. The result could lead to a clearer view of how Parkinson’s takes hold, and perhaps even ways to stop it.

The new research “goes right to the core of the matter,” says neuroscientist Raj Awatramani of Northwestern University Feinberg School of Medicine in Chicago. Pinpointing the brain cells that seem to be especially susceptible to the devastating disease is “the strength of this paper,” says Awatramani, who was not involved in the study.

Parkinson’s disease steals people’s ability to move smoothly, leaving balance problems, tremors and rigidity. In the United States, nearly 1 million people are estimated to have Parkinson’s. Scientists have known for decades that these symptoms come with the death of nerve cells in the substantia nigra. Neurons there churn out dopamine, a chemical signal involved in movement, among other jobs (SN: 9/7/17).

But those dopamine-making neurons are not all equally vulnerable in Parkinson’s, it turns out.

“This seemed like an opportunity to … really clarify which kinds of cells are actually dying in Parkinson’s disease,” says Evan Macosko, a psychiatrist and neuroscientist at Massachusetts General Hospital in Boston and the Broad Institute of MIT and Harvard.
The tricky part was that dopamine-making neurons in the substantia nigra are rare. In samples of postmortem brains, “we couldn’t survey enough of [the cells] to really get an answer,” Macosko says. But Abdulraouf Abdulraouf, a researcher in Macosko’s laboratory, led experiments that sorted these cells, figuring out a way to selectively pull the cells’ nuclei out from the rest of the cells present in the substantia nigra. That enrichment ultimately led to an abundance of nuclei to analyze.

By studying over 15,000 nuclei from the brains of eight formerly healthy people, the researchers further sorted dopamine-making cells in the substantia nigra into 10 distinct groups. Each of these cell groups was defined by a specific brain location and certain combinations of genes that were active.

When the researchers looked at substantia nigra neurons in the brains of people who died with either Parkinson’s disease or the related Lewy body dementia, the team noticed something curious: One of these 10 cell types was drastically diminished.

These missing neurons were identified by their location in the lower part of the substantia nigra and an active AGTR1 gene, lab member Tushar Kamath and colleagues found. That gene was thought to serve simply as a good way to identify these cells, Macosko says; researchers don’t know whether the gene has a role in these dopamine-making cells’ fate in people.

The new finding points to ways to perhaps counter the debilitating diseases. Scientists have been keen to replace the missing dopamine-making neurons in the brains of people with Parkinson’s. The new study shows what those cells would need to look like, Awatramani says. “If a particular subtype is more vulnerable in Parkinson’s disease, maybe that’s the one we should be trying to replace,” he says.

In fact, Macosko says that stem cell scientists have already been in contact, eager to make these specific cells. “We hope this is a guidepost,” Macosko says.

The new study involved only a small number of human brains. Going forward, Macosko and his colleagues hope to study more brains, and more parts of those brains. “We were able to get some pretty interesting insights with a relatively small number of people,” he says. “When we get to larger numbers of people with other kinds of diseases, I think we’re going to learn a lot.”

Oat and soy milks are planet friendly, but not as nutritious as cow milk

If you’ve got milk, you’ve got options. You can lighten your coffee or soak a cookie, ferment a cheese or bestow yourself a mustache. You can float some cereal or mix a shake. Replacing such a versatile substance is a tall order. And yet there is ample reason to pursue alternatives.

Producing a single liter of cow’s milk requires about 9 square meters of land and about 630 liters of water. That’s the area of two king-size beds and the volume of 10.5 beer kegs. The process of making a liter of dairy milk also generates about 3.2 kilograms of greenhouse gases.

With milk’s global popularity, those costs are enormous. In 2015, the dairy sector generated 1.7 billion metric tons of greenhouse gases, roughly 3 percent of human-related greenhouse gas emissions, according to the Food and Agricultural Organization of the United Nations.

Making plant-based milks — including oat, almond, rice and soy — generates about one-third of the greenhouse gases and uses far less land and water than producing dairy milk, according to a 2018 report in Science.
Fueled by a growing base of environmentally conscious consumers, a slew of plant-based milks has entered the market. According to SPINS, a company that collects data on natural and organic products, $2.6 billion of plant-based milks were sold in the United States in 2021. That’s a 33 percent growth in dollar sales since 2019. “Food industries have realized that consumers… want change,” says food scientist David McClements of the University of Massachusetts Amherst.

Although plant milks by and large are better for the environment and the climate, they don’t provide the same nutrition. As the iconic dairy campaign of the 1980s said, “Milk, it does a body good.” The creamy beverage contains 13 essential nutrients, including muscle-building protein, immune-boosting vitamin A and zinc, and bone-strengthening calcium and vitamin D. Plant-based milks tend to contain smaller amounts of these nutrients, and even when plant milks are fortified, researchers aren’t yet sure how well the body absorbs those nutrients.

Dairy is very challenging to try and replace, says Leah Bessa, chief science officer of De Novo Dairy, a biotechnology company in Cape Town, South Africa, that produces dairy proteins without the animals. “You don’t really have a good alternative that’s sustainable and has the same nutritional profile and functionality.”
Room for improvement
What even is milk?

By its classic definition, milk is a fluid that comes from the mammary gland of a female mammal. But Eva Tornberg, a food scientist at Lund University in Sweden who has developed a potato milk, prefers to focus on milk’s chemical structure. That is the essence of its nourishing nature, she says. “It’s an emulsion…many tiny oil droplets that are dispersed in water.”

That emulsion imbues milk with its signature creaminess and makes milk the ideal vehicle for transporting nutrients, McClements notes. The duality of oil and water means milk can carry both water-soluble nutrients, such as riboflavin and vitamin B12, and oil-soluble ones, such as vitamins A and D.

And with the fat content separated into a multitude of oil droplets — rather than a single layer — human digestive enzymes have a vast amount of surface area to react with. This makes the nutrients packed inside the droplets easy and quick to absorb.

Most plant-based milks are also emulsions, McClements says, so they too have the potential to serve as excellent nutrient-delivery systems. But for the most part, plant-based milk producers have focused much more on providing the right flavor and mouthfeel to appeal to consumers’ tastes, he says. “We need much more work with the nutritional aspects.”

What’s missing?
When it comes to nutrition, the closest competitor among the plant-based milks available today is probably soy milk, says Megan Lott, a registered dietitian with Healthy Eating Research, a Durham, N.C.-based program of the Robert Wood Johnson Foundation. Soy milk contains almost as much protein as cow milk and that protein is similarly complete — containing all the essential amino acids. “It’s actually approved by the USDA in child nutrition programs and school meal programs as a substitute for dairy milk,” she says.

But soy milks and other plant-based milks fall short on other important nutrients. Parents often think they can give their children one cup of just plant-based milk in place of one cup of cow’s milk, and they’ll be getting everything they need, Lott says. “That’s just not the case.”
Vitamin D and calcium — especially important for a growing child — are the hardest nutrients to get when dropping dairy. Most of milk’s other important components can be obtained from a healthy diet of whole grains, vegetables, fruits and lean meats, Lott says. “If you’re a parent looking to find an alternative for your child, it’s probably the calcium and vitamin D … where you should focus your decision.”

Many producers fortify plant-based milks with vitamin D and calcium to rival or exceed the level in dairy milk. But whether the body can absorb those added nutrients is another story. What consumers read on the Nutrition Facts label does not necessarily reflect how much their body will actually be able to absorb and use, Lott says.

That’s because plant-based milks may contain naturally occurring plant molecules that hinder the absorption of nutrients. For example, some plant milks, including oat and soy milks, contain phytic acid, which binds to calcium, iron and zinc and reduces the body’s absorption of these nutrients.

And adding too much of one good thing can backfire. For instance, introducing high levels of calcium into almond milk may interfere with the body’s absorption of vitamin D, McClements and colleagues reported in 2021 in the Journal of Agricultural and Food Chemistry.

More research is needed to better understand how compounds interact in plant milks and how those interactions affect nutrient absorption in the body, McClements says. Homing in on the ideal balance of ingredients will help producers of plant-based milks craft more nutritious products that taste good too, he says. “What we’re trying to do is find that sweet spot.”

Pterosaurs may have had brightly colored feathers on their heads

Pterosaurs not only had feathers, but also were flamboyantly colorful, scientists say.
That could mean that feathers — and vibrant displays of mate-seeking plumage — may have originated as far back as the common ancestor of dinosaurs and pterosaurs, during the early Triassic Period around 250 million years ago.
Analyses of the partial skull of a 113-million-year-old pterosaur fossil revealed that the flying reptile had two types of feathers, paleontologist Aude Cincotta of University College Cork in Ireland and colleagues report April 20 in Nature. On its head, the creature, thought to be Tupandactylus imperator, had whiskerlike, single filaments and more complicated branching structures akin to those of modern bird feathers.
Because the fossil’s soft tissues were also well-preserved, the team identified a variety of different shapes of pigment-bearing melanosomes in both feathers and skin. Those shapes ranged from “very elongate cigar shapes to flattened platelike disks,” says Maria McNamara, a paleobiologist also at University College Cork.
Different melanosome shapes have been linked to different colors. Short, stubby spheroidal melanosomes are usually associated with yellow to reddish-brown colors, while the longer shapes are linked to darker colors, McNamara says.
The range of melanosome geometries found in this Tupandactylus specimen suggests that the creature may have been quite colorful, the team says. And that riot of color, in turn, hints that the feathers weren’t there just to keep the creatures warm, but may have been used for visual signaling, such as displays to attract a mate.
Scientists have wrangled over whether pterosaurs, Earth’s first true vertebrate flyers, had true feathers, or whether their bodies were covered in something more primitive and hairlike, dubbed “pycnofibers” (SN: 7/22/21). If the flying reptiles did have feathers, they weren’t needed for flying; pterosaurs had fibrous membranes stretched between their long, tapering wings, much like modern bats (SN: 10/22/20).
In 2018, a team of researchers including McNamara reported that some of the fuzz covering two fossilized pterosaur specimens wasn’t just simple pycnofibers but showed distinct, complex, branching patterns similar to those seen in modern feathers (SN: 12/21/18). But some researchers have disputed this, saying that the branching observed in the fossils was an artifact of preservation, the appearance of branching created by overlapping fibers.
The new pterosaur specimen has “turned all that on its head,” McNamara says. In this fossil, “it’s very clear. We see feathers that are separated, isolated — you can’t say it’s an overlap of structures.” The fossilized feathers show successive branches of consistent length, extending all the way along a feather’s shaft.
And though the previous pterosaur fossils described in 2018 did have some preserved melanosomes, those were “middle-of-the-road shapes, little short ovoids,” McNamara says. In Tupandactylus, “for the first time we see melanosomes of different geometries” in the feathers. That all adds up to bright, colorful plumage.
“To me, these fossils close the case. Pterosaurs really had feathers,” says Stephen Brusatte, a vertebrate paleontologist at the University of Edinburgh who was not involved in the study. “Not only were many famous dinosaurs actually big fluffballs,” he says, but so were many pterosaurs.
Many dinosaurs, particularly theropod dinosaurs, also had colorful feathers (SN: 7/24/14). What this study shows is that feathers aren’t merely a bird thing, or even just a dinosaur thing, but that feathers evolved even deeper in time, Brusatte adds. And, as pterosaurs had wing membranes for flying, their feathers must have served other purposes, such as for insulation and communication.
It’s possible that dinosaurs and pterosaurs evolved this colorful plumage independently, McNamara says. But the shared structural complexity of the pigments in both groups of reptiles makes it “much more likely that it was derived from a common ancestor in the early Triassic.”
“That’s a big new implication,” says Michael Benton, a paleontologist at the University of Bristol in England.
Benton, a coauthor on the 2018 paper, wrote a separate commentary on the new study in the same issue of Nature. If feathers arose in a common ancestor, Benton says, that would push back the origin of feathers by about 100 million years, to roughly 250 million years ago.
And that might have other interesting implications, Benton writes. The early Triassic was a rough time for life on Earth; it was the aftermath of the mass extinction at the end of the Permian that killed off more than 90 percent of the planet’s species (SN: 12/6/18). If feathers did evolve during that time, the insulating fuzz, as well as warm-bloodedness, may have been part of an early arms race between reptilian mammal ancestors called synapsids and the pterosaur-dinosaur ancestor.

Why you should care about ‘The Insect Crisis’

Imagine a world without insects. You might breathe a sigh of relief at the thought of mosquito-free summers, or you might worry about how agriculture will function without pollinators. What you probably won’t picture is trudging through a landscape littered with feces and rotting corpses — what a world devoid of maggots and dung beetles would look like.

That’s just a snippet of the horrifying picture of an insect-free future that journalist Oliver Milman paints in the beginning of The Insect Crisis. “The loss of insects would be an agonizing ordeal eclipsing any war and even rivaling the looming ravages of climate breakdown,” he writes. And yet, the threat of an impending “insect apocalypse” doesn’t get nearly the same level of attention as climate change.

Researchers have been observing declining insect populations for decades. For instance, a study of nearly 40 years of data from a protected rainforest in Puerto Rico found that insect biomass had decreased by 98 percent on the ground and 80 percent in the canopy since the mid-1970s.

The threats insects face are many: Light pollution, the increasing use of pesticides and climate change are just a few (SN: 8/31/21; SN: 8/17/16; SN: 7/9/15). And it’s not only rare species that are at risk — it’s also species that were once common around the globe.

The reality of the crisis isn’t as foreboding as Milman initially makes it seem. A world with no insects is unlikely, he acknowledges. Studies have found that while some species are in decline, others, such as freshwater insects, are doing fine (SN: 4/23/20). Rather than viewing the insect crisis as all insect populations on one downward-trending line on a graph, Milman suggests picturing lots of different lines — some holding steady, some sloping up or down, and some zigzagging. “Insects are being shifted to an unhappy state where there will be far more bedbugs and mosquitoes and far fewer bumblebees and monarch butterflies,” he writes.

Those changes in biodiversity come with consequences. Farmers may have to fend off more pests that attack soybeans, for instance, and insect-pollinated fruits and vegetables will become hard to grow at scale. Some insect-eating animals will decline as their food disappears, which has already happened to some birds (SN: 7/11/14), or even vanish. Water and soil quality could also be in jeopardy.
Milman investigates the crisis by sharing his own adventures with insects, along with those of researchers, taking readers from the United States to Mexico, across the Atlantic to Europe and all the way to Australia. By sharing scientists’ stories, he makes the plight of insects personal. There’s a researcher in Denmark who has spent 25 years surveying insect populations by driving his old Ford Anglia down the same country roads and counting the number of bugs squashed against the windshield. Back when he started, he’d regularly have to clean insect guts off his car. But in recent years, he has experienced a lot of “zero insect days.” As I read that, I struggled to remember the last time I had to scrape any dead insects off my car. Another researcher recalls the joy of catching fireflies on his family ranch in Texas as a child. I felt a wave of sadness as I thought about how I don’t see fireflies as much as I did when I was a kid. With more streetlights and the switch to LED bulbs, it’s becoming harder for fireflies to spot potential mates.

Amid the doom and gloom, the book still manages to spark awe and delight with fun facts about insects. Bumblebee wings, for instance, vibrate so fast that they can produce gravitational forces of up to 50 g’s — five times greater than what fighter jet pilots experience. Milman also offers hope, sharing how certain insects are adapting to the threats and how some people are fighting to protect the critters through political campaigns and changing farming habits.

By the book’s end, readers may find that their attitude toward some insects has shifted from loathing to love, or at the very least, appreciation. (I, for one, never cared much for flies — until I learned we wouldn’t have chocolate without them.) Milman makes clear how much we benefit from insects, and what we stand to lose without them. As one researcher puts it, our deeply woven reliance on insects is like the internet: When parts of the network are removed, the less internet there is, “until eventually it doesn’t work anymore.”

A world without the internet would be difficult but livable. The same can’t be said for a world without insects.

Leonardo da Vinci’s rule for how trees branch was close, but wrong

Leonardo da Vinci was wrong about trees.

The multitalented, Renaissance genius wrote down his “rule of trees” over 500 years ago. It described the way he thought that trees branch. Though it was a brilliant insight that helped him to draw realistic landscapes, Leonardo’s rule breaks down for many types of trees. Now, a new branching rule — dubbed “Leonardo-like” — works for virtually any leafy tree, researchers report in a paper accepted April 13 in Physical Review E.

“The older Leonardo rule describes the thickness of the branches, while the length of the branch was not taken into account,” says physicist Sergey Grigoriev of the Petersburg Nuclear Physics Institute in Gatchina, Russia. “Therefore, the description using the older rule is not complete.”
Leonardo’s rule says that the thickness of a limb before it branches into smaller ones is the same as the combined thickness of the limbs sprouting from it (SN: 6/1/11). But according to Grigoriev and his colleagues, it’s the surface area that stays the same.

Using surface area as a guide, the new rule incorporates limb widths and lengths, and predicts that long branches end up being thinner than short ones. Unlike Leonardo’s guess, the updated rule works for slender birches as well as it does for sturdy oaks, the team reports.

The connection between the surface area of branches and overall tree structure shows that it’s the living, outer layers that guide tree structure, the researchers say. “The life of a tree flows according to the laws of conservation of area in two-dimensional space,” the authors write in their study, “as if the tree were a two-dimensional object.” In other words, it’s as if just two dimensions — the width of each limb and the distance between branchings on a limb — determine any tree’s structure. As a result, when trees are rendered in two dimensions in a painting or on a screen, the new rule describes them particularly well.
The new Leonardo-like rule is an improvement, says Katherine McCulloh, a botanist at the University of Wisconsin–Madison who was not involved with this study. But she has her doubts about the Russian group’s rationale for it. In most trees, she says, the living portion extends much deeper than the thin surface layer.

“It’s really species-dependent, and even age-dependent,” McCulloh says. “A giant, old oak tree might have a centimeter of living wood … [but] there are certainly tropical tree species that have very deep sapwood and may have living wood for most of their cross sections.”

Still, the fact that the Leonardo-like rule appears to hold for many trees intrigues McCulloh. “To me, it drives home the question of why are [trees] conserving this geometry for their external tissue, and how is that related to the microscopic level differences that we observe in wood,” she says. “It’s a really interesting question.”

To test their rule, Grigoriev and colleagues took photographs of trees from a variety of species and analyzed the branches to confirm that the real-world patterns matched the predictions. The photos offer “a direct measurement of the characteristics of a tree without touching it, which can be important when dealing with a living object,” Grigoriev says.

Though the team hasn’t studied evergreens yet, the rule holds for all of the deciduous trees that the researchers have looked at. “We have applied our methodology to maple, linden, apple,” Grigoriev says, in addition to oak, birch and chestnut. “They show the same general structure and obey the Leonardo-like rule.”

While it’s possible to confirm the rule by measuring branches by hand, it would require climbing into trees and checking all the limbs — a risky exercise for trees and scientists alike. “Note,” the researchers write, “that not a single tree was harmed during these experiments.”